Tool request: Integration von SecretomeP v1.0 in Galaxy
Dear Galaxy Developers, I would like to have this tool integrated into Galaxy. It is similar to SignalP, however, where SignalP predict conventional secretion / membrane integration, SecretomeP predicts unconventional secretion. More information is in the attached paper. A browser-version of SecretomeP v2.0 is available at http://www.cbs.dtu.dk/services/SecretomeP/ However, it is restricted to 100 uploaded sequences, so processing of large datasets is tedious. Therefore, integration into Galaxy would be great! A portable version of SecretomeP exists and is available here: http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?secretomep It is only v1.0, but the difference between the versions is minimal (see also attached email of the developers). There is one caveat: SecretomeP can deal with sequences only up to 4,000 amino acids (I am not sure, if including or excluding the 4,000). It would be great to integrate a small preselection to sort out longer sequences into the Galaxy tool. Kind regards, Florian Sigloch P.S.: I am currently writing up my PhD thesis and I am short on time. Would it be possible to integrate SecretomeP in 2-4 weeks? Pleeeeease? P.P.S.: I have been in contact with Dr. Björn Grüning about this, but I do not want to bother him during his current trip to the US.
participants (1)
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Florian Sigloch