Alex, This is definitely an issue, but it is not currently high priority for the Galaxy team. We expect to move the Velvet wrappers to the tool shed in the near future, and from there others can enhance the wrappers as needed. In the meantime, community contributions to the Galaxy code base, including existing tool wrappers, are most welcome. Best, J. On Oct 8, 2012, at 7:53 PM, Oleksandr Moskalenko wrote:

Velveth wrapper passes the location of the database/files/xxx/dataset_yyy_files to the velveth as an argument. Same paths are put into the output html file. This method can't work anymore when jobs are submitted under real user names as a real user doesn't have write permissions outside of the exernal_chown_script, so the velveth wrapper is broken for all installations using real user id jobs at this time.

Regards,

Alex ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:

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