Fwd: Request for pulling the updated FASTQ (de-)interlacer tool
Let me know if you have any questions about this. Thanks, Florent -------- Original Message -------- Subject: Request for pulling the updated FASTQ (de-)interlacer tool Date: Tue, 17 May 2011 17:47:13 +1000 From: Florent Angly <florent.angly@gmail.com> To: galaxy-dev@lists.bx.psu.edu <galaxy-dev@lists.bx.psu.edu> Dear Galaxy team, Please consider pulling these changes I made to the interlacer/de-interlacer tools into the main Galaxy repository: https://bitbucket.org/fangly/galaxy-central/changeset/7f7ec8f05d36 While the tools were handling mate pairs fine, I now added the ability to also keep single reads (reads that miss their mate) in a separate file. The functional tests were updated and pass. Thanks, Florent
Can anyone comment on my email please? Florent On 22/05/11 14:03, Florent Angly wrote:
Let me know if you have any questions about this. Thanks, Florent
-------- Original Message -------- Subject: Request for pulling the updated FASTQ (de-)interlacer tool Date: Tue, 17 May 2011 17:47:13 +1000 From: Florent Angly <florent.angly@gmail.com> To: galaxy-dev@lists.bx.psu.edu <galaxy-dev@lists.bx.psu.edu>
Dear Galaxy team, Please consider pulling these changes I made to the interlacer/de-interlacer tools into the main Galaxy repository: https://bitbucket.org/fangly/galaxy-central/changeset/7f7ec8f05d36 While the tools were handling mate pairs fine, I now added the ability to also keep single reads (reads that miss their mate) in a separate file. The functional tests were updated and pass. Thanks, Florent
Has anyone on the list tried this patch? Feedback would be appreciated. Thanks, K On Fri, May 27, 2011 at 1:27 AM, Florent Angly <florent.angly@gmail.com>wrote:
Can anyone comment on my email please? Florent
On 22/05/11 14:03, Florent Angly wrote:
Let me know if you have any questions about this. Thanks, Florent
-------- Original Message -------- Subject: Request for pulling the updated FASTQ (de-)interlacer tool Date: Tue, 17 May 2011 17:47:13 +1000 From: Florent Angly <florent.angly@gmail.com> <florent.angly@gmail.com> To: galaxy-dev@lists.bx.psu.edu <galaxy-dev@lists.bx.psu.edu><galaxy-dev@lists.bx.psu.edu>
Dear Galaxy team, Please consider pulling these changes I made to the interlacer/de-interlacer tools into the main Galaxy repository:https://bitbucket.org/fangly/galaxy-central/changeset/7f7ec8f05d36 While the tools were handling mate pairs fine, I now added the ability to also keep single reads (reads that miss their mate) in a separate file. The functional tests were updated and pass. Thanks, Florent
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Hi Kanwei, I think we'll get more feedback once it when it is added to Galaxy. I have run small tests (included in the functional tests) and real large datasets and have had no issues with the scripts and wrappers. Regards, Florent On 27/05/11 18:49, Kanwei Li wrote:
Has anyone on the list tried this patch? Feedback would be appreciated.
Thanks,
K
On Fri, May 27, 2011 at 1:27 AM, Florent Angly <florent.angly@gmail.com <mailto:florent.angly@gmail.com>> wrote:
Can anyone comment on my email please? Florent
On 22/05/11 14:03, Florent Angly wrote:
Let me know if you have any questions about this. Thanks, Florent
-------- Original Message -------- Subject: Request for pulling the updated FASTQ (de-)interlacer tool Date: Tue, 17 May 2011 17:47:13 +1000 From: Florent Angly <florent.angly@gmail.com> <mailto:florent.angly@gmail.com> To: galaxy-dev@lists.bx.psu.edu <mailto:galaxy-dev@lists.bx.psu.edu> <galaxy-dev@lists.bx.psu.edu> <mailto:galaxy-dev@lists.bx.psu.edu>
Dear Galaxy team, Please consider pulling these changes I made to the interlacer/de-interlacer tools into the main Galaxy repository: https://bitbucket.org/fangly/galaxy-central/changeset/7f7ec8f05d36 While the tools were handling mate pairs fine, I now added the ability to also keep single reads (reads that miss their mate) in a separate file. The functional tests were updated and pass. Thanks, Florent
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Committed on trunk. On Thu, Jun 2, 2011 at 2:25 AM, Florent Angly <florent.angly@gmail.com>wrote:
Hi Kanwei, I think we'll get more feedback once it when it is added to Galaxy. I have run small tests (included in the functional tests) and real large datasets and have had no issues with the scripts and wrappers. Regards, Florent
On 27/05/11 18:49, Kanwei Li wrote:
Has anyone on the list tried this patch? Feedback would be appreciated.
Thanks,
K
On Fri, May 27, 2011 at 1:27 AM, Florent Angly <florent.angly@gmail.com>wrote:
Can anyone comment on my email please? Florent
On 22/05/11 14:03, Florent Angly wrote:
Let me know if you have any questions about this. Thanks, Florent
-------- Original Message -------- Subject: Request for pulling the updated FASTQ (de-)interlacer tool Date: Tue, 17 May 2011 17:47:13 +1000 From: Florent Angly <florent.angly@gmail.com> <florent.angly@gmail.com> To: galaxy-dev@lists.bx.psu.edu <galaxy-dev@lists.bx.psu.edu><galaxy-dev@lists.bx.psu.edu>
Dear Galaxy team, Please consider pulling these changes I made to the interlacer/de-interlacer tools into the main Galaxy repository:https://bitbucket.org/fangly/galaxy-central/changeset/7f7ec8f05d36 While the tools were handling mate pairs fine, I now added the ability to also keep single reads (reads that miss their mate) in a separate file. The functional tests were updated and pass. Thanks, Florent
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (2)
-
Florent Angly -
Kanwei Li