Re: [galaxy-dev] Newer Version of Cufflinks Wrapper
Ilya, A patch is fine for a one-time fix; this is easy with Mercurial: % hg diff > my_patch.patch However, if you plan to contribute to Galaxy on a regular basis, we encourage you to fork Galaxy and maintain your own Bitbucket repository. Finally, please send all emails to our mailing lists rather than individual Galaxy developers or other list members. Sending email to the mailing lists ensures that everyone can see and contribute to questions and issues; in addition, emails to mailing lists are tracked and archived so that they are available in the future. Thanks, J. On Jul 21, 2011, at 5:16 PM, Chorny, Ilya wrote:
I would be happy to share any changes that I make. By patch do you mean a diff/patch share patch or just check in the code?
From: Jeremy Goecks [mailto:jeremy.goecks@emory.edu] Sent: Wednesday, July 20, 2011 4:55 PM To: Chorny, Ilya Cc: galaxy-user-bounces@lists.bx.psu.edu; galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Newer Version of Cufflinks Wrapper
Ilya,
Despite the wrapper version numbers (which I'll update shortly to avoid further confusion), the current Cufflinks wrapper in both galaxy-central and galaxy-dist supports Cufflinks v1.0.3 However, not all new options for v1.0.3 are implemented the current wrappers; should you decide to implement additional options in the Cufflinks/compare/diff wrappers, please consider submitting a patch that we could incorporate into Galaxy.
Best, J.
On Jul 21, 2011, at 1:30 AM, Chorny, Ilya wrote:
Has anyone produced a newer version of the cufflinks wrapper? The current wrapper is for version 0.9.1.
Thanks,
Ilya
Ilya Chorny Ph.D. Bioinformatics – Intern ichorny@illumina.com 858-202-4582
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I just hit reply. Would be easier if when I hit reply it automatically sent the email back to the list. That's how other mailing lists that.I'm on work. Thanks for the hg info. Thanks, Ilya Sent from my iPhone On Jul 22, 2011, at 6:32 AM, "Jeremy Goecks" <jeremy.goecks@emory.edu<mailto:jeremy.goecks@emory.edu>> wrote: Ilya, A patch is fine for a one-time fix; this is easy with Mercurial: % hg diff > my_patch.patch However, if you plan to contribute to Galaxy on a regular basis, we encourage you to fork Galaxy and maintain your own Bitbucket repository. Finally, please send all emails to our mailing lists rather than individual Galaxy developers or other list members. Sending email to the mailing lists ensures that everyone can see and contribute to questions and issues; in addition, emails to mailing lists are tracked and archived so that they are available in the future. Thanks, J. On Jul 21, 2011, at 5:16 PM, Chorny, Ilya wrote: I would be happy to share any changes that I make. By patch do you mean a diff/patch share patch or just check in the code? From: Jeremy Goecks [mailto:jeremy.goecks@emory.edu] Sent: Wednesday, July 20, 2011 4:55 PM To: Chorny, Ilya Cc: <mailto:galaxy-user-bounces@lists.bx.psu.edu> galaxy-user-bounces@lists.bx.psu.edu<mailto:galaxy-user-bounces@lists.bx.psu.edu>; <mailto:galaxy-dev@lists.bx.psu.edu> galaxy-dev@lists.bx.psu.edu<mailto:galaxy-dev@lists.bx.psu.edu> Subject: Re: [galaxy-dev] Newer Version of Cufflinks Wrapper Ilya, Despite the wrapper version numbers (which I'll update shortly to avoid further confusion), the current Cufflinks wrapper in both galaxy-central and galaxy-dist supports Cufflinks v1.0.3 However, not all new options for v1.0.3 are implemented the current wrappers; should you decide to implement additional options in the Cufflinks/compare/diff wrappers, please consider submitting a patch that we could incorporate into Galaxy. Best, J. On Jul 21, 2011, at 1:30 AM, Chorny, Ilya wrote: Has anyone produced a newer version of the cufflinks wrapper? The current wrapper is for version 0.9.1. Thanks, Ilya Ilya Chorny Ph.D. Bioinformatics – Intern <mailto:ichorny@illumina.com>ichorny@illumina.com<mailto:ichorny@illumina.com> 858-202-4582 ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: <http://lists.bx.psu.edu/> http://lists.bx.psu.edu/
participants (2)
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Chorny, Ilya -
Jeremy Goecks