Is this the right spot for this question? Or is it better to ask elsewhere?

On Mon, 13 May 2019 at 09:50, Eric Kuyt erickuyt@gmail.com wrote:

Hey all,

I have a question about the samtools_slice_bam tool in the samtools suite.

It seems the references variable remains empty after re-detecting metadata. I now tried sorting the bam in galaxy and manually in samtools, but no references coming up.

I also ran a breakpoint in the binary.Bam.set_meta but it doesn't seem to be catched.

Any ideas? Thx.

Eric

Eric: I recommend https://help.galaxyproject.org/ for your question, it might reach a better audience there.

Paula: I believe you can unsubscribe here: https://lists.galaxyproject.org/lists/galaxy-dev.lists.galaxyproject.org/

Regards,

Martin

On Wed, May 22, 2019 at 12:49 PM Paula Berrutti paula_dandara@hotmail.com wrote:

Please,

Remove my email fro the list

Thank you,

Paula

Obter o Outlook para Androidhttps://aka.ms/ghei36

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From: Eric Kuyt erickuyt@gmail.com Sent: Wednesday, May 22, 2019 9:33:57 AM To: galaxy-dev@lists.galaxyproject.org Subject: [galaxy-dev] Re: samtools_slice_bam/2.0.1 no options available

Is this the right spot for this question? Or is it better to ask elsewhere?

On Mon, 13 May 2019 at 09:50, Eric Kuyt erickuyt@gmail.com wrote:

...

Hey all,

I have a question about the samtools_slice_bam tool in the samtools

suite.

...

It seems the references variable remains empty after re-detecting metadata. I now tried sorting the bam in galaxy and manually in samtools, but no references coming up.

I also ran a breakpoint in the binary.Bam.set_meta but it doesn't seem to be catched.

Any ideas? Thx.

Eric

---

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