Hi Galaxy-P,
I would like to package some tools for the toolshed and include them in the Galaxy-P github repo. The tools are: - percolator and pout2mzid - hardklor/kronik - msstitch (aka my own tool) And maybe some isobaric protein quant R script, and/or updates to MSGF+.
Anyway, I have poked around a little and have no problems creating and testing tools. However the toolshed syntax is a bit confusing. I understand I have to specify a package definition (tool_dependencies.xml) which installs the tool. And then the tool itself, which seems easy enough.
My questions about this: - Is there any doc on the toolshed XML that defines how you install your binaries? I am planning to build from source, since percolator has binaries for different linuxes. (If it is not possible to specify which one of those to use.) - what is in the admin-scripts directory? Static data?
Hoping to submit pull requests soon!
cheers, — Jorrit Boekel Proteomics systems developer BILS / Lehtiö lab Scilifelab Stockholm, Sweden