Hi, We are running the galaxyp-central. Thanks in advance, Gerben On Oct 21, 2013, at 4:19 PM, Bart Gottschalk <bgottsch@umn.edu> wrote:
What version of Galaxy did you clone and are running when you get this error?
http://bitbucket.org/galaxy/galaxy-central/ http://bitbucket.org/galaxy/galaxy-dist/ http://bitbucket.org/galaxyp/galaxyp-central/
Once we have this answer we can help you debug the error.
On Mon, Oct 21, 2013 at 8:25 AM, John Chilton <chil0060@umn.edu> wrote:
---------- Forwarded message ---------- From: Gerben Menschaert <gerben.menschaert@gmail.com> Date: Mon, Oct 21, 2013 at 4:40 AM Subject: Re: ASMS Follow Up To: John Chilton <chil0060@umn.edu>
Hello John Mitchel,
I hope you can help out. PeptideShaker used to be on our Galaxy-P environment, but I removed it. I'm trying to re-install it again from the toolshed.
While doing so, I bumped into the following error (see below).
Could you point me in the good directory.
Many thanks in advance, Gerben Menschaert
PS: Also, is there a special GALAXY-P user/development mailing list?
app_iter = self.application(environ, detect_start_response) Module paste.recursive:80 in __call__ view return self.application(environ, start_response) Module paste.httpexceptions:633 in __call__ view return self.application(environ, start_response) Module galaxy.web.framework.base:132 in __call__ view return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:190 in handle_request view body = method( trans, **kwargs ) Module galaxy.web.framework:221 in decorator view return func( self, trans, *args, **kwargs ) Module galaxy.webapps.galaxy.controllers.admin_toolshed:850 in prepare_for_install view repository_util.handle_tool_shed_repositories( trans, installation_dict, using_api=False ) Module tool_shed.galaxy_install.repository_util:338 in handle_tool_shed_repositories view new_tool_panel_section=new_tool_panel_section ) Module tool_shed.util.repository_dependency_util:149 in create_repository_dependency_objects view common_install_util.activate_repository( trans, installed_tool_shed_repository ) Module tool_shed.util.common_install_util:36 in activate_repository view tool_panel_dict = repository.metadata[ 'tool_panel_section' ] KeyError: 'tool_panel_section'
On Jun 17, 2013, at 4:52 PM, John Chilton <chil0060@umn.edu> wrote:
On behalf of myself and my colleague Jim Johnson, I wanted to thank you for dropping by one or both of our posters. You can find digital copies of both poster below.
"Reproducible Proteomic Workows using Extensions to the Galaxy Framework" http://getgalaxyp.org/documents/asms2013_galaxy_extensions.pdf
"Building Proteomic Application Platforms for Cloud Computing Environments with CloudBioLinux" http://getgalaxyp.org/documents/asms2013_cloud_computing.pdf
We had a great time last Monday and agree that a lot of good ideas were generated. If you have specific questions, comments, or suggestions please do not hesitate to drop us a line. (I have cc'ed Jim Johnson, as well Dr. Pratik Jagtap the Galaxy-P project manager, Dr. Ben Lynch the head of application development at MSI, and Dr. Timothy Griffin the principle investigator for Galaxy-P on this e-mail. Feel free to direct questions to whomever you feel is most appropriate.)
You can find more information about Galaxy-P at http://getgalaxyp.org/ and try our public server at https://usegalaxyp.org/. You can find more information about Galaxy more broadly at http://galaxyproject.org/ and CloudBioLinux at http://cloudbiolinux.org/. All of our source code is open source and available at various places on BitBucket and GitHub, if you are interested in any particular part of what we have done let me know which and I can point you to it.
Thanks again, -John
------------------------------------------------ John Chilton Senior Software Developer University of Minnesota Supercomputing Institute Office: 612-625-0917 Cell: 612-226-9223