What version of Galaxy did you clone and are running when you get this error?
http://bitbucket.org/galaxy/galaxy-central/ http://bitbucket.org/galaxy/galaxy-dist/ http://bitbucket.org/galaxyp/galaxyp-central/
Once we have this answer we can help you debug the error.
On Mon, Oct 21, 2013 at 8:25 AM, John Chilton chil0060@umn.edu wrote:
---------- Forwarded message ---------- From: Gerben Menschaert gerben.menschaert@gmail.com Date: Mon, Oct 21, 2013 at 4:40 AM Subject: Re: ASMS Follow Up To: John Chilton chil0060@umn.edu
Hello John Mitchel,
I hope you can help out. PeptideShaker used to be on our Galaxy-P environment, but I removed it. I'm trying to re-install it again from the toolshed.
While doing so, I bumped into the following error (see below).
Could you point me in the good directory.
Many thanks in advance, Gerben Menschaert
PS: Also, is there a special GALAXY-P user/development mailing list?
⇝ KeyError: 'tool_panel_section' URL: http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_too... Module weberror.evalexception.middleware:*364* in respond http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True# viewhttp://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#
app_iter *=* self*.*application*(*environ*,* detect_start_response*)* Module paste.recursive:*80* in __call__ http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True# viewhttp://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#
*return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*633* in __call__ http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True# 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*return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*132* in __call__ http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True# viewhttp://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#
*return* self*.*handle_request*(* environ*,* start_response *)* Module galaxy.web.framework.base:*190* in handle_request 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body *=* method*(* trans*,* ****kwargs *)* Module galaxy.web.framework:*221* in decorator http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True# viewhttp://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%3A7b22706570746964657368616b6572223a205b2254686973207265706f7369746f727920636f6e7461696e73206120746f6f6c20746861742077726170732053656172636847554920616e6420506570746964655368616b65722e20222c2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564752f7265706f732f67616c617879702f706570746964657368616b6572222c2022313836666463346233333130222c20223136222c202267616c61787970222c207b22726f6f745f6b6579223a2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564755f5f455345505f5f706570746964657368616b65725f5f455345505f5f67616c617879705f5f455345505f5f3138366664633462333331305f5f455345505f5f46616c7365222c20226465736372697074696f6e223a202252657175697265642070726f74656f6d69637320646570656e64656e636965732e222c2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564755f5f455345505f5f706570746964657368616b65725f5f455345505f5f67616c617879705f5f455345505f5f3138366664633462333331305f5f455345505f5f46616c7365223a205b5b22687474703a2f2f746f6f6c736865642e67322e62782e7073752e656475222c202270726f74656f6d6963735f646174617479706573222c2022697261636f6f6b65222c2022663734323930623133366663222c202246616c7365225d2c205b22687474703a2f2f746f6f6c736865642e67322e62782e7073752e656475222c20227061636b6167655f7365617263686775695f315f31345f34222c202267616c61787970222c2022363764653531643532393037222c202246616c7365225d2c205b22687474703a2f2f746f6f6c736865642e67322e62782e7073752e656475222c20227061636b6167655f706570746964657368616b65725f305f32305f31222c202267616c61787970222c2022636664353562366334666132222c202246616c7365225d5d7d2c207b22706570746964655f7368616b65722f302e32302e31223a207b227265706f7369746f72795f6e616d65223a2022706570746964657368616b6572222c20226e616d65223a2022706570746964655f7368616b6572222c202276657273696f6e223a2022302e32302e31222c20227265706f7369746f72795f6f776e6572223a202267616c61787970222c20226368616e67657365745f7265766973696f6e223a2022313836666463346233333130222c202274797065223a20227061636b616765227d2c20227365617263686775692f312e31342e31223a207b227265706f7369746f72795f6e616d65223a2022706570746964657368616b6572222c20226e616d65223a2022736561726368677569222c202276657273696f6e223a2022312e31342e31222c20227265706f7369746f72795f6f776e6572223a202267616c61787970222c20226368616e67657365745f7265766973696f6e223a2022313836666463346233333130222c202274797065223a20227061636b616765227d7d5d7d&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#
*return* func*(* self*,* trans*,* ***args*,* ****kwargs *)* Module galaxy.webapps.galaxy.controllers.admin_toolshed:*850* in prepare_for_install http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True# viewhttp://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#
repository_util*.*handle_tool_shed_repositories*(* trans*,* installation_dict*,* using_api*=*False *)* Module tool_shed.galaxy_install.repository_util:*338* in handle_tool_shed_repositories http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True# viewhttp://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#
new_tool_panel_section*=*new_tool_panel_section *)* Module tool_shed.util.repository_dependency_util:*149* in create_repository_dependency_objects http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True# viewhttp://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#
common_install_util*.*activate_repository*(* trans*,* installed_tool_shed_repository *)* Module tool_shed.util.common_install_util:*36* in activate_repository http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True# viewhttp://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True#
tool_panel_dict *=* repository*.*metadata*[* 'tool_panel_section' *]* *KeyError: 'tool_panel_section'*
On Jun 17, 2013, at 4:52 PM, John Chilton chil0060@umn.edu wrote:
On behalf of myself and my colleague Jim Johnson, I wanted to thank you for dropping by one or both of our posters. You can find digital copies of both poster below.
"Reproducible Proteomic Workows using Extensions to the Galaxy Framework" http://getgalaxyp.org/documents/asms2013_galaxy_extensions.pdf
"Building Proteomic Application Platforms for Cloud Computing Environments with CloudBioLinux" http://getgalaxyp.org/documents/asms2013_cloud_computing.pdf
We had a great time last Monday and agree that a lot of good ideas were generated. If you have specific questions, comments, or suggestions please do not hesitate to drop us a line. (I have cc'ed Jim Johnson, as well Dr. Pratik Jagtap the Galaxy-P project manager, Dr. Ben Lynch the head of application development at MSI, and Dr. Timothy Griffin the principle investigator for Galaxy-P on this e-mail. Feel free to direct questions to whomever you feel is most appropriate.)
You can find more information about Galaxy-P at http://getgalaxyp.org/ and try our public server at https://usegalaxyp.org/. You can find more information about Galaxy more broadly at http://galaxyproject.org/ and CloudBioLinux at http://cloudbiolinux.org/. All of our source code is open source and available at various places on BitBucket and GitHub, if you are interested in any particular part of what we have done let me know which and I can point you to it.
Thanks again, -John
John Chilton Senior Software Developer University of Minnesota Supercomputing Institute Office: 612-625-0917 Cell: 612-226-9223
Hi, We are running the galaxyp-central. Thanks in advance, Gerben
On Oct 21, 2013, at 4:19 PM, Bart Gottschalk bgottsch@umn.edu wrote:
What version of Galaxy did you clone and are running when you get this error?
http://bitbucket.org/galaxy/galaxy-central/ http://bitbucket.org/galaxy/galaxy-dist/ http://bitbucket.org/galaxyp/galaxyp-central/
Once we have this answer we can help you debug the error.
On Mon, Oct 21, 2013 at 8:25 AM, John Chilton chil0060@umn.edu wrote:
---------- Forwarded message ---------- From: Gerben Menschaert gerben.menschaert@gmail.com Date: Mon, Oct 21, 2013 at 4:40 AM Subject: Re: ASMS Follow Up To: John Chilton chil0060@umn.edu
Hello John Mitchel,
I hope you can help out. PeptideShaker used to be on our Galaxy-P environment, but I removed it. I'm trying to re-install it again from the toolshed.
While doing so, I bumped into the following error (see below).
Could you point me in the good directory.
Many thanks in advance, Gerben Menschaert
PS: Also, is there a special GALAXY-P user/development mailing list?
⇝ KeyError: 'tool_panel_section' URL: http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_too... Module weberror.evalexception.middleware:364 in respond view
app_iter = self.application(environ, detect_start_response)
Module paste.recursive:80 in __call__ view
return self.application(environ, start_response)
Module paste.httpexceptions:633 in __call__ view
return self.application(environ, start_response)
Module galaxy.web.framework.base:132 in __call__ view
return self.handle_request( environ, start_response )
Module galaxy.web.framework.base:190 in handle_request view
body = method( trans, **kwargs )
Module galaxy.web.framework:221 in decorator view
return func( self, trans, *args, **kwargs )
Module galaxy.webapps.galaxy.controllers.admin_toolshed:850 in prepare_for_install view
repository_util.handle_tool_shed_repositories( trans, installation_dict, using_api=False )
Module tool_shed.galaxy_install.repository_util:338 in handle_tool_shed_repositories view
new_tool_panel_section=new_tool_panel_section )
Module tool_shed.util.repository_dependency_util:149 in create_repository_dependency_objects view
common_install_util.activate_repository( trans, installed_tool_shed_repository )
Module tool_shed.util.common_install_util:36 in activate_repository view
tool_panel_dict = repository.metadata[ 'tool_panel_section' ]
KeyError: 'tool_panel_section'
On Jun 17, 2013, at 4:52 PM, John Chilton chil0060@umn.edu wrote:
On behalf of myself and my colleague Jim Johnson, I wanted to thank you for dropping by one or both of our posters. You can find digital copies of both poster below.
"Reproducible Proteomic Workows using Extensions to the Galaxy Framework" http://getgalaxyp.org/documents/asms2013_galaxy_extensions.pdf
"Building Proteomic Application Platforms for Cloud Computing Environments with CloudBioLinux" http://getgalaxyp.org/documents/asms2013_cloud_computing.pdf
We had a great time last Monday and agree that a lot of good ideas were generated. If you have specific questions, comments, or suggestions please do not hesitate to drop us a line. (I have cc'ed Jim Johnson, as well Dr. Pratik Jagtap the Galaxy-P project manager, Dr. Ben Lynch the head of application development at MSI, and Dr. Timothy Griffin the principle investigator for Galaxy-P on this e-mail. Feel free to direct questions to whomever you feel is most appropriate.)
You can find more information about Galaxy-P at http://getgalaxyp.org/ and try our public server at https://usegalaxyp.org/. You can find more information about Galaxy more broadly at http://galaxyproject.org/ and CloudBioLinux at http://cloudbiolinux.org/. All of our source code is open source and available at various places on BitBucket and GitHub, if you are interested in any particular part of what we have done let me know which and I can point you to it.
Thanks again, -John
John Chilton Senior Software Developer University of Minnesota Supercomputing Institute Office: 612-625-0917 Cell: 612-226-9223
galaxy-proteomics@lists.galaxyproject.org
-
Bart Gottschalk -
Gerben Menschaert