How does one get gene names when using cuffdiff when looking at "gene differential expression testing" results?
I am doing some +/- exposure studies with zebrafish embryos and then processing the 50bp single-ended fastq files through Galaxy with particular interest in the cuffdiff readout of differential gene expression. It seems to be working well but my readout is only giving me gene ID's. It would by more efficient if I could get gene names from the output.
I suspect I may be able to do this through selection of options from the UCSC TABLE BROWSER when I use its Zv9 danRer7 assembly as a reference genome. I see a place for selected genes but not for all the identified genes.
Is this something that could be done directly or is there just a "beyond Galaxy" method of gene gene lists from a list of gene ID's.
Thanks,
el linney Duke University Medical Center