18 Oct
2012
18 Oct
'12
3:34 a.m.
dear forum, I have two samples, treated and untreated. When I run cuffcompare (to created the gtf file for cuffdiff) do i have to give as input the cufflinks from both samples and the reference annotation or only the treated cuffliks?
I very confused. any help much appreciated.
thanks, ib