Hi Rodolfo, Using Rpy to interface Galaxy and R was not a good idea in my experience, when Rpy was used Galaxy seams to not be able to handle the interruption of a file being loaded (e.g network failure or refresh action in the browser) we solved the problem by using Popen instead. Regards, Jorge On Mon, May 10, 2010 at 10:55 PM, Kanwei Li <kanwei@gmail.com> wrote:
Hi Rodolfo,
You are probably not using the macports python to run galaxy... please check by entering "which python" in console.
Thanks,
Kanwei
On Mon, May 10, 2010 at 3:59 AM, Rodolfo Aramayo <raramayo@tamu.edu> wrote:
People,
I have installed Galaxy on my laptop following standard procedures I have installed R, NumPy and RPy via MacPorts yet Galaxy seems to complain it cannot connect to them == An error occurred running this job: Traceback (most recent call last): File "/Library/WebServer/Documents/galaxy_dist/tools/stats/gsummary.py", line 4, in <module> from rpy import * ImportError: No module named rpy == Any ideas/suggestions would be greatly appreciated
Thanks
Rodolfo Aramayo _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user
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