Dear sir,
I was looking through your Galaxy Wiki, but could not find an answer to my question. I would most appreciate any help regarding the following issue:
I'm conducting a GWAS study in horses. Up until now I've been using PLINK for my association analysis, and now I wish to generate a Manhattan plot. I've been looking through your online version of Galaxy-Tool under SNP/WGA: QC; LD; Plots http://main.g2.bx.psu.edu/root/tool_menu# --> Manhattan/QQ:http://main.g2.bx.psu.edu/tool_runner?tool_id=rgManQQ1 link, and I've read all the instructions. I think I have an appropriate file ready to run this on your online version, but I was hoping you can send me an example file of how exactly the data should look like (and not just brief explanations about the syntax), and in what format exactly should I upload it? If you have a tutorial about this, even better.
Many thanks!
Sincerely,
Sagi Polani Molecular Evolution Lab Koret School of Veterinary Medicine The Hebrew University of Jerusalem Israel