Hello,
Instructions for including a new genome indexed for tools, including how to download the same indexes used on the public Main Galaxy instance hosted at http://usegalaxy.org, are in these wikis:
http://wiki.g2.bx.psu.edu/Admin/Data%20Integration http://wiki.g2.bx.psu.edu/Admin/NGS%20Local%20Setup
The "dbkey" that you will want to use is simply "hg19" for this genome, should you use the rsync service.
Going forward, the galaxy-dev@bx.psu.edu mailing list would be a good choice for local install questions. The development community can help solve more complex problems as they come up and/or you might be interested in following discussions: http://wiki.g2.bx.psu.edu/Support#Mailing_Lists http://wiki.g2.bx.psu.edu/Mailing%20Lists
Hopefully this helps!
Jen Galaxy team
On 9/26/12 12:47 PM, Kenneth Auerbach wrote:
Hi,
I'm getting this cuffmerge error on our local Galaxy instance. I assume it is because it doesn't have the hg19 reference genome. Can you please tell me how I would include into this Galaxy installation?
Thank you.