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Hi,
proteins are synthetised from transcripts, not from genes, so I wouldn't use gene DE. It can become quite tricky to interpret these for some alternative transcripts.
Beast, Leonor.
On 28/07/12 18:06, i b wrote:
Hi, I am a bit confused about two outputs of cuffdiff: If I want to see if two samples, e.g. treated and un-treated express similar protein levels, what would be best to look at gene differential expression or transcript diff. expression?
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- -- Leonor Palmeira, PhD
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