Hello Jedd,
This would be a good case for using a Custom reference genome. Instructions are here: http://wiki.galaxyproject.org/Support#Custom_reference_genome
Take care,
Jen Galaxy team
On 8/2/13 6:23 AM, Mr. Lai U Ming, Julian wrote:
Hi,
I'm working on the filamentous fungi, Neurospora crassa and would like to use Galaxy to do some RNASeq analysis. Could you please load the Neurospora crassa genome into the reference data base on Galaxy. The sequences can be found at EnsemblFungi and at the Broad Intitute site. Could you please let me know which of the data set is used so that I can get the .gtf file. Thanks.
Best regards,
Julian Lai Junior Research Fellow Jedd Group Temasek Life Sciences Laboratory 1 Research Link National University of Singapore Singapore 117604
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TLL is organizing an international conference on Next Generation Genomic View on Plants, Animals and Microbes on March 5th to 7th, 2014. For more information, please visit http://conference.tll.org.sg
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