Hi Steve, J. Taylor (Galaxy team) created this wiki location to house such type of efforts: http://bitbucket.org/galaxy/galaxy-central/wiki/ThirdPartyTools cheers, Erick On 24 March 2010 09:25, Steve Taylor <stephen.taylor@imm.ox.ac.uk> wrote:
Hi,
Just out of interest, is there a repository/Wiki page where all the XML conf files for apps can be submitted? A Weblogo interface is a good example of something that would benefit lots of people. I am sure there will be lots of others instances of third party apps developed outside the main Galaxy team in future (especially as Galaxy takes off!).
Steve
iceLogo looks indeed very promising; however, in terms of integration to Galaxy, WebLogo (http://code.google.com/p/weblogo/) seems to be much more straightforward?
cheers, Erick
On 23 March 2010 23:59, Pieter Neerincx <pieter.neerincx@gmail.com> wrote:
I can recommend iceLogo too. Kind of sequence logos on steroids :). It's a pretty young project and I found some graphical glitches in the interface, but the developers respond very quickly :). They also offer iceLogo as a web service that you can call remotely...
Cheers,
Pi
On Mar 23, 2010, at 8:07 PM, Mary Mangan wrote:
We know people like weblogo: http://weblogo.berkeley.edu/
And I recently started using Icelogo: http://iomics.ugent.be/icelogoserver/main.html
But there are others out there, I know.
Mary
-----Original Message----- From: galaxy-user-bounces@lists.bx.psu.edu [mailto:galaxy-user-bounces@lists.bx.psu.edu] On Behalf Of Anton Nekrutenko Sent: Tuesday, March 23, 2010 2:31 PM To: Erick Antezana Cc: galaxy-user@bx.psu.edu Subject: Re: [galaxy-user] Sequence logo
Erick:
Not at the moment. Do you have any in mind?
a.
On Mar 23, 2010, at 6:33 AM, Erick Antezana wrote:
Hi,
is there any Galaxy tool supporting the display of "sequence logos" (http://en.wikipedia.org/wiki/Sequence_logo) ?
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