So here is what I've installed so far. (/usr/local/galaxy) is a directory that all nodes in the cluster can see. And the web server machine can also see it.)
$ls -l /usr/local/galaxy drwxrwxr-- 20 galaxy scicomp 2206 Nov 8 15:53 galaxy-dist -rwxrwxr-x 1 galaxy scicomp 1882 Nov 8 15:34 galaxy.fedora-init drwxr-xr-x 5 galaxy scicomp 67 Nov 8 10:08 galaxy_python -rw-r--r-- 1 galaxy scicomp 80 Nov 8 15:32 job_environment_setup_file drwxrwxr-- 2 galaxy scicomp 28 Nov 8 15:43 logs
Here are are the changes I made to galaxy-dist/universe_wsgi.ini http://pastie.org/5351347
Here is what I put in my job_environment_setup_file: export TEMP=/scratch/galaxy source /usr/local/galaxy/galaxy_python/bin/activate
The galaxy_python directory contains my virtual env based off of Python 2.7.
Finally here are the contents of my galaxy.fedora-init file: http://pastie.org/5351396
(Note: I created a sym link in /etc/init.d/ to /usr/local/galaxy/galaxy.fedora-init Then ran chkconfig --add galaxy.fedora-init So I can use sudo /sbin/service galaxy.fedora-init start/stop)
Here are the results from running: $sudo /sbin/service galaxy.fedora-init start http://pastie.org/5351308
So my first question is why does it appear to be using Python 2.6? Is it not using my virtual env? Am I using virtual env incorrectly?
Thanks,
Greg