Jen, Thanks for the information. Kathryn
From: Jennifer Jackson [mailto:jen@bx.psu.edu] Sent: Monday, May 13, 2013 6:18 PM To: Sun, Wenping [USA] Cc: galaxy-user@lists.bx.psu.edu Subject: [External] Re: [galaxy-user] Question on galaxy data visualization
Hello Kathryn,
Trackster is the primary data visualization tool and can be accessed by clicking on the mini graph icon within a dataset:
[cid:image001.png@01CE50AA.D31EDA40]
or by going to "Visualization" in the upper menu bar and starting a new track browser. http://wiki.galaxyproject.org/Learn#Visualization
If you are interested, for certain datasets, the icon will also offer other options: Circster and/or Scatterplot. The tool group "Graph/Display Data" has graphing tools and tools that prepare data to be visualized. The tool group "Motif Tools" has a sequence logo generator, and the groups " NGS: QC and manipulation" and " BEDTools" have more graphing tools.
Hopefully this helps,
Jen Galaxy team On 5/13/13 11:08 AM, Sun, Wenping [USA] wrote:
Dear galaxy group,
I have question on the data visualization from output of galaxy pipeline. Is there any ideogram tool inside of galaxy?
Regards,
Kathryn
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
--
Jennifer Hillman-Jackson
Galaxy Support and Training
