Re: [galaxy-user] suggestion for multithreading
Louise-Amélie Schmitt wrote:
>
> default_cluster_job_runner will remain for backwards compatibility, but
> we'll ship a sample job_conf.xml that runs everything locally by
> default.
>
> --nate
Haha, and I did that before realizing I could do just what I needed by
writing tool-specific pbs:// URLs at the end of the config file... I'm such
an idiot.
Haha, okay, I don't think i even noticed since I was distracted by your
implementation being a step in the way we want to go with it.
But I really like what you did of it and I have a couple of
questions.
Concerning the single-threaded tools, what would happen if the number of
threads set in the xml file was >1 ?
It'd consume extra slots, but the tool itself would just run as usual.
Could it be possible to forbid a tool to run on a given node?
Hrm. In PBS you could do it using node properties/neednodes or resource
requirements. I'd have to think a bit about how to do this in a more
general way in the XML.
--nate
Thanks,
L-A
>
>>
>> Peter
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