Sébastien,
This seems to be a galaxy bug from a little while back. To fix your cloud instance, go to the cloud admin console and click "Update Galaxy", and the problem should be resolved once galaxy updates and restarts.
-Dannon
On Fri, Jan 3, 2014 at 6:42 PM, Sébastien Vigneau < sebastien.vigneau@gmail.com> wrote:
Hi,
I can't import workflows from file on a freshly installed instance of Galaxy on Amazon Cloud. The error message is copied below. Do you have some idea on how to fix this?
Thanks,
Sébastien
Internal Server Error
Galaxy was unable to sucessfully complete your request URL: http://ec2-50-19-79-199.compute-1.amazonaws.com/workflow/import_workflow Module galaxy.web.framework.middleware.error:149 in __call__
app_iter = self.application(environ, sr_checker)
Module paste.recursive:84 in __call__
return self.application(environ, start_response)
Module paste.httpexceptions:633 in __call__
return self.application(environ, start_response)
Module galaxy.web.framework.base:132 in __call__
return self.handle_request( environ, start_response )
Module galaxy.web.framework.base:190 in handle_request
body = method( trans, **kwargs )
Module galaxy.webapps.galaxy.controllers.workflow:1127 in import_workflow
workflow, missing_tool_tups = self._workflow_from_dict( trans, data,
source=src,add_to_menu=add_to_menu ) Module galaxy.webapps.galaxy.controllers.workflow:1823 in _workflow_from_dict
module = module_factory.from_dict( trans, step_dict, secure=False )
Module galaxy.workflow.modules:428 in from_dict
return self.module_types[type].from_dict( trans, d, **kwargs )
Module galaxy.workflow.modules:222 in from_dict
module.state.decode( d[ "tool_state" ], module.tool,
module.trans.app, secure=secure ) Module galaxy.tools:849 in decode
self.inputs = params_from_strings( tool.inputs, values, app,
ignore_errors=True ) Module galaxy.tools.parameters:92 in params_from_strings
value = json_fix( from_json_string( value ) )
Module simplejson:384 in loads Module simplejson.decoder:402 in decode TypeError: expected string or buffer
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