Hello Dr. Linney,
This genome (multiple releases, including danRer7) is scheduled for the next batch of genome processing. You will see the last two batches published to the public Main instance first - sometime next week - and this next batch update published around the start of April. (There may be other small data releases in between).
So that you can follow progress, I added an annotation to the public Trello genome request ticket here. If the genome is published earlier than the other requests, any new tickets will be linked: https://trello.com/c/YqRsZnFI (Trello help -> https://wiki.galaxyproject.org/Issues)
A new wiki area is in progress that will outline our updated data release batch "snapshot" process - including the new contents of each snapshot. (A "snapshot" is a versioned data release). Each release, a tweet will go out to the @galaxyproject Twitter feed that includes a link to the wiki with details. If you don't use Twitter, the posts are also available here on our wiki: https://wiki.galaxyproject.org/Galaxy%20on%20Twitter
Now is a good time to make requests - for you and others. After the update next week, please review (many genomes will be new & have added content, please check first) and then make requests via Trello using this Inbox card for prioritization. Details matter. https://trello.com/c/mJWnAuuQ
Thanks!
Jen Galaxy team
On 3/12/14 3:23 PM, Elwood Linney wrote:
Can you add danrer7 as a reference genome for tophat2 for online Galaxy?
Its there for tophat for Illumina.
Elwood Linney
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