The CuffDiff tool at the main/test public instances and in the last dist should all support multiple groups. If you want detailed help for the Cuff* tools, then the tool author's support list might be able to help: email@example.com.
Best wishes for your project,
Jen Galaxy team
On 10/1/11 5:57 AM, An, Hongyan wrote:
I have 3 groups of accepted hits, each group has 3 replicates. When I add 3 groups with corresponding replicates, the cuffdiff output only gave 2 groups comparison of differential expression, Please help me here
Hongyan An, Ph.D. Research Associate Genomics Core of Yale Stem Cell Center Yale University School of Medicine 10 Amistad Street Room 203 New Haven, CT 06520 phone: (203)-737-6203 Fax: (203) 785-4305 firstname.lastname@example.org:email@example.com
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