Hi jen, I have used BOWTIE to align my RNA-seq reads to HSV2 genome; out of 35,000,000 lines, only 621 lines left when I chose to have mapped reads only. How can visualize these aligned reads to HSV-2 genome?
In the panel of converted SAM to BAM, I tried to use the data in trickster, but I am not sure to how to build a HSV genome as a reference?
I appreciate your help,
tao