Thanks Peter for another option! Jen Galaxy team On 11/23/13 6:19 AM, Peter Cock wrote:
On Fri, Nov 22, 2013 at 8:48 PM, Jennifer Jackson <jen@bx.psu.edu> wrote:
Hi Seung Hee,
I know we discussed this on the other list, but I didn't point you to the open development ticket to (potentially) extend the functions of the "Cut" tool. This is not being actively worked on right now, but you can follow it for updates if you want. https://trello.com/c/CbFSHrU5
Others are still welcome to comment about what types of solutions they might have to offer. There is no specific tool to do this on Main right now (or in the Tool Shed, from my checks). http://usegalaxy.org/toolshed This tool of mine might do what Seung Hee wanted, but I have not tried it on very large Illumina datasets:
http://toolshed.g2.bx.psu.edu/view/peterjc/seq_primer_clip
Regards,
Peter
-- Jennifer Hillman-Jackson http://galaxyproject.org