Re: [galaxy-user] microarray analysis tools

Leandro, that's hopefully on it's way (http://www.genomespace.org/). Cheers,    Oliver On 21 Jul 2010, at 10:13, Leandro Hermida wrote: > Hi Ross, > > Thank you for the offer, it's a bit complicated for me.  My users are > bioinformaticians who are doing a lot of microarray analysis and > meta-analysis and they need many of the public tools available that I > see on GenePattern > > GenePattern seems to have many tools and visualizers around microarray > analysis, pathway and network inferencing, etc. > Galaxy seems to have many tools and visualizers around next-gen > sequencing, genomic analysis, and public server integration, etc. > > I've written quite a few tools for Galaxy for other purposes and love > how easy it is to develop against and how flexible it is to your > needs.  You can really do some elegant stuff and it is accomodating. > GenePattern I find to be much more rigid in what you can do and how > you have to develop against it. > > If I could only have the Galaxy development platform with the > GenePattern and Galaxy tools! :( > > -Leandro > > On Wed, Jul 21, 2010 at 1:24 PM, Ross <ross.lazarus(a)gmail.com&gt; wrote: >> I have wrappers for a couple of popular bioconductor packages. >> Not yet ready for production use, but happy to talk if you're interested? >> >> >> On Wed, Jul 21, 2010 at 7:09 PM, Leandro Hermida >> <softdev(a)leandrohermida.com&gt; wrote: >>> Hello, >>> >>> Are there publicly available tools in Galaxy for microarray data >>> analysis, visualization, etc?  Or is this kind of GenePattern's space >>> and you want to stay separate? :) >>> >>> best, >>> Leandro >>> _______________________________________________ >>> galaxy-user mailing list >>> galaxy-user(a)lists.bx.psu.edu >>> http://lists.bx.psu.edu/listinfo/galaxy-user >>> >> > > _______________________________________________ > galaxy-user mailing list > galaxy-user(a)lists.bx.psu.edu > http://lists.bx.psu.edu/listinfo/galaxy-user -- Research Scientist    Department of Biostatistics Associate Director    Bioinformatics Core                      Harvard School of Public Health Skype: ohofmann       Phone: +1 (617) 365 0984