Hi Rich,
Are you using a local instance or the main public instance at http://usegalaxy.org?
There was a bug fix to this tool on the public instance right around the time this error was reported. Please try the job again. If it fails, it may be that the files are too large, although an error would be expected.
If after the re-run, the same thing occurs, please share a link to the history and we can take a look. Use "Options -> Share or Publish", generate the link, and send directly to me (not the list).
Best,
Jen Galaxy team
On 9/30/11 9:43 AM, Richard Mark White wrote:
Hi, I mapped two illumina runs using TopHat (they are from same RNA sample). Then tried to use the BAM merge tool to make this into one BAM file for further processes. But it returned an empty file. Is this not possible? Maybe I am not understanding the purpose/use of BAM merge?
Rich
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