Hello Paul,
As a double check that this was not a transient server problem (due to usage), please try a quick re-run.
If the problem persists, would you have time to share your history containing the error? Please use "Options -> Share or Publish" and email the link back to me directly. We will provide feedback as soon as possible.
Best,
Jen Galaxy team
On 5/31/11 4:04 AM, Paul McAdam wrote:
Hi,
I'm trying to use the concatenate fasta tool at http://main.g2.bx.psu.edu/root?tool_id=fasta_concatenate0 to concatenate an xmfa file output from mauve (headers formatted to following standard:>1:517-24215(+)|0402981.fa but am receiving the following error.
Traceback (most recent call last): File "/galaxy/home/g2main/galaxy_main/tools/fasta_tools/fasta_concatenate_by_species.py", line 40, in if __name__ == "__main__" : __main__() File "/galaxy/home/g2main/galaxy_main/tools/fasta_tools/fasta_concatenate_by_species.py", line 23, in __main__ species[component.species] = tempfile.TemporaryFile() File "/usr/lib/python2.6/tempfile.py", line 475, in TemporaryFile (fd, name) = _mkstemp_inner(dir, prefix, suffix, flags) File "/usr/lib/python2.6/tempfile.py", line 228, in _mkstemp_inner fd = _os.open(file, flags, 0600) OSError: [Errno 24] Too many open files: '/space/g2main/tmpotY_hX'
Does anyone have any ideas what the issue may be?
Regards
Paul
Laboratory for Bacterial Evolution and Pathogenesis Centre for Infectious Diseases and The Roslin Institute University of Edinburgh Easter Bush Campus Midlothian EH25 9RG
Tel: +44 (0)131 6519231 email: p.mcadam@sms.ed.ac.uk ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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