Hi Paul,
On Apr 10, 2012, at 9:15 AM, Paul-Michael Agapow wrote:
As per the title, I’m trying to setup a toolshed for our local use. After creating a repo, I try to upload the initial file only to get:
TypeError: array item must be charWhich seems to happen repeatedly, i.e. it’s not a passing error.
I'll need to see your paster log to be able to help on this one. You can view it using "tail -f community_webapp.log" (without the quotes) from your Galaxy install directory. Can you respond back with the content?
While I’m here, a perhaps obvious question: where or how does the main Galaxy instance get the list of toolsheds to display? The main and test sheds are hardcoded in, I guess, but how does it pick up the local – simply by virtue of the fact that it is local?
The list of tool sheds available to any local Galaxy instance is defined in the tool_sheds_conf.xml file in the Galaxy install directory. For your local shed, you'll simply need to an entry like this:
<tool_shed name="Bx tool shed" url="http://gvk.bx.psu.edu:9009/%22/%3E
p
Paul Agapow (paul-michael.agapow@hpa.org.uk) Bioinformatics, Health Protection Agency
Thanks,
Greg Von Kuster
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