Hello Chris,
The Galaxy distribution includes a sqlite database, but although it is a great product, it is not recommended for a multi-user, live Galaxy instance ( not thread-safe, etc ). To use a mysql or postgres db, simply create the desired database and change your database connection setting in your universe_wsgi.ini file. Comment out the default:
database_file = database/universe.sqlite
and add a mysql setting:
database_connection = mysql:///<database name>
or possibly something like:
database_connection = mysql:///<database name>?unix_socket=/var/run/mysqld/mysqld.sock
Greg Von Kuster Galaxy Development Team
Chris Cole wrote:
Hi,
Galaxy looks like a really cool tool and I'm very keen to try it out on our local set-up (Linux, BTW).
This is probably the first of many questions... ;)
I've got the basic setup up and running, but I saw somewhere (can't find it now) that you recommend using mysql or postgres for a live set-up. Can you point me to instructions or tell me how I can get galaxy talking to our mysql server? Cheers,
Chris _______________________________________________ galaxy-user mailing list galaxy-user@bx.psu.edu http://mail.bx.psu.edu/cgi-bin/mailman/listinfo/galaxy-user