Hi Seung Hee,
You can request that this tool be added to the public Main server at usegalaxy.org through Trello and the team will consider it. For right now, the options are local or cloud. (as in my other reply)
Or, you can look around the the other public servers hosted by our community - each is run by a distinct group with their own contact/help/public-use criteria: http://wiki.galaxyproject.org/PublicGalaxyServers
It may be simplest to see if a local will do the job, then upload the results to the public server for downstream analysis. Just do the very basics of a "production server" install and then add the tool to test it out. This will take some line commands to set up, but shouldn't be too much of an investment. The links are: http://getgalaxy.org http://usegalaxy.org/toolshed http://wiki.galaxyproject.org/Tool%20Shed#Installing.2C_maintaining_and_unin... Local install help/discussion: galaxy-dev@bx.psu.edu Subscribe or search prior Q/A: http://wiki.galaxyproject.org/MailingLists
Take care,
Jen Galaxy team
On 11/25/13 11:29 AM, Seung Hee Cho wrote:
Thank you for much for your great help! I am trying to use this tool but I am wondering if I can use this CutAdapt tools on the public server. I was working on my job on the public server, so if not I need download it for use. I truly appreciate your help!
Best,
*Seung Hee Cho* Contreras Research Group, CPE 5.416 The University of Texas at Austin Department of Chemical Engineering 200 E Dean Keeton St. Stop C0400 Austin, TX 78712-1589
On Mon, Nov 25, 2013 at 10:08 AM, Jennifer Jackson <jen@bx.psu.edu mailto:jen@bx.psu.edu> wrote:
Thanks Peter for another option! Jen Galaxy team On 11/23/13 6:19 AM, Peter Cock wrote: On Fri, Nov 22, 2013 at 8:48 PM, Jennifer Jackson <jen@bx.psu.edu <mailto:jen@bx.psu.edu>> wrote: Hi Seung Hee, I know we discussed this on the other list, but I didn't point you to the open development ticket to (potentially) extend the functions of the "Cut" tool. This is not being actively worked on right now, but you can follow it for updates if you want. https://trello.com/c/CbFSHrU5 Others are still welcome to comment about what types of solutions they might have to offer. There is no specific tool to do this on Main right now (or in the Tool Shed, from my checks). http://usegalaxy.org/toolshed This tool of mine might do what Seung Hee wanted, but I have not tried it on very large Illumina datasets: http://toolshed.g2.bx.psu.edu/view/peterjc/seq_primer_clip Regards, Peter -- Jennifer Hillman-Jackson http://galaxyproject.org