By the way, can you use detect the fastq file using trimmer by column with your PC. Thanks a lot. Gang On Thu, Feb 13, 2014 at 1:14 PM, Björn Grüning <bjoern.gruening@gmail.com>wrote:
Hi Wang,
please check if your fastq file is associated with the correct fastq format, fastqsanger probably.
Cheers, Bjoern
Hi,
I just notice that NGS FASTQ Trimmer by column can't detect the fastq file I loaded. Anyone knows why. thanks a lot.
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Today's Topics:
1. Re: Creating a Trackster visualisation from a reference in your history (Jeremy Goecks)
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Message: 1 Date: Thu, 23 Jan 2014 15:49:44 -0500 From: Jeremy Goecks <jgoecks@email.gwu.edu> To: graham etherington (TSL) <graham.etherington@sainsbury-laboratory.ac.uk> Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Creating a Trackster visualisation from a reference in your history Message-ID: <C3382F38-D243-4979-B6A7-BA13EF161EE5@email.gwu.edu> Content-Type: text/plain; charset="windows-1252"
> Is it possible to create a custom build and use it to view a SAM file without adding the .len and .2bit files in to the Galaxy file system as an administrator?
Yes, it definitely is.
> If so, what am I doing wrong?
This is a Galaxy bug which has been fixed in this commit:
https://bitbucket.org/galaxy/galaxy-central/commits/117fef56513fc563dd231516...
We have a release coming up, so this fix will be included in the release and will make it to our public server soon. In the meantime, note that you can use the genome fasta file rather than the len file to create a custom build and everything should work.
Thanks, J.