I'm getting started with deploying tools to a galaxy site and I'm having a little trouble understanding the appropriate syntax for the <configfile> contents. I see there are a few examples in tools currently available within the galaxy distribution, but I'm wondering if there is a complete set of documentation somewhere?
I'm a little confused as to when to use '#' tags in front of commands and how to specify what gets written to the config file rather than the code that is executed to build the config script.