Karl,
Zea mays is now available as a general database/build label. The full value is "Zea_mays_B73_RefGen_v2", but searching for any part of that or "maize" will bring it up.
Thanks for using Galaxy.
Regards, Kelly
On Mar 6, 2011, at 12:09 PM, karlerhard@berkeley.edu wrote:
Oh, I didn't see your email before I sent that last one. That makes sense, thanks for the confirmation!
Karl,
Zea mays is available for use under the NGS tools. I did notice that it is not available as one of Galaxy's genome/database labels (such as on upload), but this is an oversight that will be corrected ASAP. You can still use the mapping tools in the meantime.
Regards, Kelly
On Mar 5, 2011, at 3:49 PM, karlerhard@berkeley.edu wrote:
Hello,
I'm interested in using the galaxy tools to analyze some transcriptome libraries I made of maize seedlings. Would it be possible to upload the maize reference genome to the galaxy browser?
It's available at the following website:
http://ftp.maizesequence.org/current/
Hope this can be done, would be really exciting!
Thanks,
Karl
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