Hello all,
Does anyone know if Galaxy can process Ion Torrent Data? Currently, it appears that Ion
Torrent data is not a supported platform. I know that the data is in FastQ Sanger, so I
would think there would be a way to incorporate it into one of the existing platform
pipelines, but which one?
Ion Torrent protocols are very similar to 454 in terms of library construction, etc.
Should I use Lastz - Roche -454 mapping mode? I want to compare the Ion Torrent data with
Illumina data (from the same DNA), so perhaps I should use the illumina workflow.
Any insight would be very helpful,
Thanks,
Mike Dufault