The preferred method for uploading large files (that aren't already hosted somewhere) is FTP. See the instructions here: http://wiki.g2.bx.psu.edu/Learn/Upload%20via%20FTP
We don't generally provide specific analysis pipelines, rather the tools for composing them, though you're welcome to look through the shared workflows, histories, and pages (See "Shared Data" in Galaxy) for examples and perhaps someone else will chime in with their experiences analyzing bacterial transcriptomes.
Lastly, try not to piggyback on unrelated threads (as in your other email). It makes tracking email replies more difficult.
On Jan 9, 2012, at 10:30 AM, Ateequr Rehman wrote:
Dear galaxy Users
I am very very new to galaxy, will be highly obliged if some one could help me to find the way to analyse bacterial tramnscriptome. in the first step itself , i am having trouble to upload files...
Does any one knows how to generate URL to upload data, my fastq files are about 3 gb each,
Is there any specific pipeline to analyse bacterial transcriptome
Thanking all of you
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