Hi David,
Trinity is still under development and really shouldn't be on the Test instance yet (in fact, we are removing it). Very sorry about any confusion. It is a known that assembly tools would be very useful for many of our users (starting from a few sources: SAMTools Pileup, de novo RNA-seq) and are working towards tools/solutions in the near term.
To be alerted when new tools are available, you can follow our News RSS feed http://galaxyproject.org/wiki/News. New tools are always announced in the News Brief, in an email to mailing list subscribers, and sometimes Tweeted.
Thanks for using Galaxy!
Best,
Jen Galaxy team
On 9/13/11 2:03 PM, David Joly wrote:
I want to run Trinity on the "test" instance of Galaxy, but there seems to be a problem. The analysis complete very quickly and I've got no assembled transcripts. In the log file created by Trinity, there is one line: /var/spool/torque/mom_priv/jobs/1204985.thumper.g2.bx.psu.edu.SC http://1204985.thumper.g2.bx.psu.edu.SC: 11: Trinity.pl: not found Any idea? David
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