22 Mar
2013
22 Mar
'13
4:34 p.m.
I would like to be able to replicate what Galaxy does to find indels on my own machine. However, I am facing the following challenges: 1. I want to find Indels in the 3-way multiz alignment of hg18, panTro2, and rheMac2, but I cannot find the alignment anywhere. Where can I get the alignment file? 2. I cannot find code for extracting the Indel's anywhere. What program did you use? Thanks so much! Irene