23 Mar
2013
23 Mar
'13
4:34 a.m.
I would like to be able to replicate what Galaxy does to find indels on my own machine. However, I am facing the following challenges:
1. I want to find Indels in the 3-way multiz alignment of hg18, panTro2, and rheMac2, but I cannot find the alignment anywhere. Where can I get the alignment file?
2. I cannot find code for extracting the Indel's anywhere. What program did you use?
Thanks so much!
Irene