26 Mar
2012
26 Mar
'12
7:52 p.m.
Hi,
I need to sort a BAM file by read names, I was wondering if this is possible with a tool included in Galaxy?
I know any BAM file produced inside Galaxy will be sorted by coordinates, but I couldn't find an option to change this to queryname in any tool. Picard has the tool SortSam[1], perfect for this task, but it doesn't seem to be included at the moment. Is there any other option currently included? Are there any plans to include one?
[1]http://picard.sourceforge.net/command-line-overview.shtml#SortSam
Thanks, Carlos