Karl,
For the URL you're pasting, is it the full path to a file in your s3 bucket, including the protocol (http://) ? For galaxy to recognize that it needs to pull from a URL rather than the contents of the box, you need to use the full string.
-Dannon
On Mar 14, 2011, at 4:40 PM, karlerhard@berkeley.edu wrote:
Hello,
I have been able to get Galaxy to instantiate on our Cloud account, and would like to use the NGS tools to trim and map Illumina libraries.
However, when I tried to import .txt files (the data contained in these files are in fastq format) located in an S3 bucket, Galaxy did not recognize them as fastq data. I tried to import the files via the URL of the S3 bucket, and Galaxy just imported the actual name of the URL rather than the file itself.
Do I need to change the extension of these .txt files to .fastq? Or have I gotten something wrong with respect to the location of the data in the S3 bucket?
thanks for any help!
karl
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