On Jan 27, 2010, at 11:23 AM, Erick Antezana wrote:
Unfortunately, we have in our system GLIBC 2.5 (glibc-2.5-42.el5_4.2). We have tried to bypass such requirement by compiling pysam and manually copying the csamtools.so file without success. Once I try to launch Galaxy (run.sh) it fetches the original egg (and so library)... The variable FETCH_EGGS was set to 0 but it is still fetching the latest versions...Are we missing something? Otherwise, would it be possible to have such egg for glib 2.5 ?
You may build your pysam version with
python setup.py bdist_egg
and then copy it to $GALAXYPATH/eggs/py-VERSION-OS-egg/pysam-VERSION-OSRELEASE.egg
so next time you run galaxy it will find your egg in the right place with the right name :-)
I did it yesterday (for freebsd)
d
/* Davide Cittaro
Cogentech - Consortium for Genomic Technologies via adamello, 16 20139 Milano Italy
tel.: +39(02)574303007 e-mail: davide.cittaro@ifom-ieo-campus.it */