Apologies for the delay in reply. We wanted to point you to the
documentation for the tool and the author's help email:
They also have a mailing list (the link is on the right menu bar of
their web page).
Hopefully you have already found these answers or the tool authors can
offer help beyond what is documented (the tool option documentation is
what Galaxy has on the tool form),
On 10/12/11 4:00 AM, dongdong zhaoweiming wrote:
It's the first time for me to use cufflinks in galaxy, two choices
confused me as follows:
Perform Bias Correction:
Bias detection and correction can significantly improve accuracy of
transcript abundance estimates.
Set Parameters for Paired-end Reads? (not recommended):
what is the Bias correction and how does it work? And for "set
parameters for paired-end reads? (not recommended)" ,what would be
important difference between recommended and not recommended?
Thanks a lot!
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: