No, you'll need to stop and restart your Galaxy server.
On Mar 1, 2012, at 2:01 PM, Alejandra Rougon wrote:
I did close the web browser and opened it again was that enough?
From: Greg Von Kuster greg@bx.psu.edu To: Alejandra Rougon alerougon@yahoo.com Cc: Jennifer Jackson jen@bx.psu.edu; "galaxy-user@lists.bx.psu.edu" galaxy-user@lists.bx.psu.edu; "closeticket@galaxyproject.org" closeticket@galaxyproject.org Sent: Thursday, 1 March 2012, 12:46 Subject: Re: [galaxy-user] Speed up uploading into local Galaxy, terribly slow!!
Do you restart your Galaxy server when you make changes to universe_wsgi.ini (like adding / uncommenting email addresses for the admin_users setting)?
On Mar 1, 2012, at 12:56 PM, Alejandra Rougon wrote:
Thanks Jennifer, I already uncomment and add my email address but still the admin link does not appear. I then registered my email in users and logged in with that email address and I still don't see the link. when I type /admin at the of the url it says that I have to be logged in as an administrator. sorry I am a newbe on this admin stuff.
From: Jennifer Jackson jen@bx.psu.edu To: Alejandra Rougon alerougon@yahoo.com Cc: "galaxy-user@lists.bx.psu.edu" galaxy-user@lists.bx.psu.edu; "closeticket@galaxyproject.org" closeticket@galaxyproject.org Sent: Tuesday, 28 February 2012, 17:19 Subject: Re: [galaxy-user] Speed up uploading into local Galaxy, terribly slow!!
Hi,
You will want to assign yourself as an administrator in the universe_wsgi.ini file.
# Administrative users - set this to a comma-separated list of valid Galaxy # users (email addresses). These users will have access to the Admin section # of the server, and will have access to create users, groups, roles, # libraries, and more. For more information, see: # http://wiki.g2.bx.psu.edu/Admin/Interface #admin_users = None ^^ uncomment and add your login email here
Other wikis that may be helpful, especially if user login is not yet set up: http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server http://wiki.g2.bx.psu.edu/Admin/Config
Hopefully this helps,
Jen Galaxy team
On 2/28/12 2:59 PM, Alejandra Rougon wrote:
Thank you Greg, I saw the wiki but I do not see the admin link in my galaxy interface. How do you open galaxy as an administrator? t
*From:* Greg Von Kuster greg@bx.psu.edu *To:* Alejandra Rougon alerougon@yahoo.com *Cc:* "galaxy-user@lists.bx.psu.edu" galaxy-user@lists.bx.psu.edu *Sent:* Tuesday, 28 February 2012, 14:02 *Subject:* Re: [galaxy-user] Speed up uploading into local Galaxy, terribly slow!!
You can upload your large file to Galaxy data libraries using a combination of "Upload files from filesystem paths" and "Do not copy data into Galaxy's default file store".
See this wiki:
http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Uploading%20Library%20Files
For all of the information on Galaxy data libraries, see this wiki:
http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Libraries
Greg Von Kuster
On Feb 28, 2012, at 2:54 PM, Alejandra Rougon wrote:
Hello, I tried to search in the forums and although this question has appeared many times I still don't have a solution.
I cannot manage to upload big files into the local galaxy, it just takes ages. Can I not just copy and paste into a local directory? why do I have to upload the files if it is already installed locally? I do not have a server webpage in order to use the url address option If I do it through ftp (locally) what ftp address shall I put? ftp localhost:8080??
Is there any other option to speed up uploading, is so slow that is no longer worth using it, please help me!
The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org http://usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support
The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at: