Hi Greg,
are there still any plans to add a link to the clean_datasets.py script from the Admin view?
Erick
2009/7/17 Greg Von Kuster ghv2@psu.edu:
Hi Erick,
The process we've been using on our Galaxy instances has been to set up cron to execute the shell scripts on a daily basis, something like this:
# clean up datasets 0 7 * * * cd /var/opt/home/g2test/server-home/test ; sh ./scripts/cleanup_datasets/delete_userless_histories.sh ; sh ./scripts/cleanup_datasets/purge_histories.sh ; sh ./scripts/cleanup_datasets/purge_datasets.sh
This works quite well, and the logs files for each of these processes can be viewed to see what occurred.
We'll definitely consider adding a link to this script in the Admin view as well.
Greg Von Kuster Galaxy Development Team
Erick Antezana wrote:
Hi Greg,
thanks for the heads-up.
the scripts work fine; however, it would be great to have such functionality from within the Admin interface (Data section?). Are there any plans to implement such request?
cheers, Erick
2009/7/16 Greg Von Kuster <ghv2@psu.edu mailto:ghv2@psu.edu>
Hi Erick,
Never do this manually as it will result in problems in your Galaxy instance. Use the ~/scripts/cleanup_datasets/cleanup_datasets.py script in the Galaxy distribution. Refer to the http://g2.trac.bx.psu.edu/wiki/PurgeHistoriesAndDatasets wiki for deatils about executing the script. The wiki is a bit outdated - we have a bitbucket ticket open ( # 99 -
http://bitbucket.org/galaxy/galaxy-central/issue/99/update-the-purgehistorie... ) to correct this.
Greg Von Kuster Galaxy Development Team
Erick Antezana wrote:
Hi,
how can I purge my deleted datasets that were imported so that I could clean a bit my disk? I saw they are under database/files/000/*
thanks, Erick
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