This is a known issue with Bowtie2 at this time and a correction is in progress.
Sorry for any confusion,
Jen Galaxy team
On 10/9/13 8:57 AM, Mikel Egaña Aranguren wrote:
I'm trying to use the bowtie2 wrapper but it generates and empty output with the "no peek" sign. I have sucesfully recreated the analysis with the same datatsets on the shell, so it must be something to do with Galaxy, but I don't know where to look at. Any clues? Thanks
I'm using bowtie2-2.1.0 and Galaxy:
changeset: 10421:a477486bf18e branch: stable tag: tip user: Nate Coraor <email@example.com mailto:firstname.lastname@example.org> date: Thu Sep 26 11:02:58 2013 -0400 summary: Bugfix for tool-to-destination mapping, tool ids are lowercased but the mapping id was not lowercased
-- Mikel Egaña Aranguren, Ph.D.
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