Keith,
For getting data, the easiest thing to do is to create a new tool config. Copy "tools/data_source/ucsc_tablebrowser.xml" in your Galaxy instance to something like "tools/data_source/ ucsc_tablebrowser_local_mirror.xml". Then in that file change (1) the name and id attributes of the <tool> element to something unique and (2) the action attribute of the <inputs> element to point to the URL of your mirror. Then add the new tool config to your "tool_conf.xml".
As long as your UCSC mirror is a reasonably recent version, it will then communicate properly with your local Galaxy instance.
Please let us know if you have any problems.
Thanks, James
On Apr 4, 2008, at 3:38 PM, Keith Lamont wrote:
Hi all,
Is it possible to customize Galaxy to use a mirror of the genome browser?
Thanks,
Keith Lamont
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