Re: [galaxy-user] galaxy-user Digest, Vol 29, Issue 13
AFAIK, both $userId (the user numeric id) and $userEmail are added to
the parameters in jobs/__init__.py, so should work...
On Thu, Nov 20, 2008 at 12:00 PM, <galaxy-user-request(a)bx.psu.edu> wrote:
Date: Wed, 19 Nov 2008 13:45:24 -0500
From: Assaf Gordon <gordon(a)cshl.edu>
Subject: [galaxy-user] Using user name in a tool's XML
To: galaxy-user(a)bx.psu.edu
Message-ID: <49245EC4.7020402(a)cshl.edu>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed
Hello,
Is it possible to access the user name inside a tool's XML configuration
file ?
I want to pass the user name (the user who executed the job) as an
argument to the tool. Is there such a variable?
Something like:
<tool id="mytool" name="foobar">
<command>mytool.sh --file $input --title $input.name --user
$galaxy_user</command>
...
...
--
Ross Lazarus, Associate Professor, DACP, Harvard Medical School.
Director of Bioinformatics, Channing Laboratory, BWH
181 Longwood Ave., Boston MA 02115, USA.