7 Jul
2011
7 Jul
'11
1:46 a.m.
Hi all, Is there any way to find out the number of reads aligning to a transcript rather than the FPKM calculated by Cufflinks?
I'm also interested in obtaining summary statistics for mapping analyses or RNA-Seq data, such as % of reads aligned, % uniquely aligned, mapped to exons, introns, etc. Is there a tool that would provide a summary table with this information?
Thanks for your help and providing this great resource, James