Hello Jörg,
We can add your genome to the list to be prioritized for inclusion, but the quickest way to use this data in Galaxy is with the "custom genome" option.
Instructions are in our wiki (below), but there are really only two short steps: 1 - load the fasta record into your history 2 - select the reference genome from your history's list of fasta datasets (instead of the pull-down native builds list)
http://wiki.g2.bx.psu.edu/Support#Custom_reference_genome
Hopefully this helps to get your analysis going!
Jen Galaxy team
On 8/9/12 4:28 AM, Joerg Willenborg wrote:
Dear Sir or Madam,
with interest I followed up your Galaxy platform and I am planing a Bowtie mapping with RNA-Seq data. Unfortunately the reference genome I am looking for is not included in the drop down menu. Do you think it is possible to add the Streptococcus suis P1/7 (NC_012925.1) genome to the menu?
I would appreciate any reply on this email and thank you very much in advance
Kind regards
Jörg Willenborg
Joerg Willenborg, PhD Institute of Microbiology University of Veterinary Medicine Hannover Bischofsholer Damm 15 D-30173 Hannover Germany Tel: +49511-8567595 e-mail: joerg.willenborg@tiho-hannover.de
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