Hello Efthymios,
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On Dec 20, 2011, at 4:02 AM, Makis Ladoukakis wrote:
Dear Galaxy users,
Has anyone worked with velvetoptimiser tool from the Tool shed? I have been trying both the stable and the test version of the velvetoptimiser tool and i keep getting the same error:
Traceback (most recent call last): File "/home/ladoukef/galaxy_dist/tools/myTools/velvetoptimiser/velvet_optimiser.py", line 102, in if __name__ == "__main__": __main__() File "/home/ladoukef/galaxy_dist/tools/myTools/velvetoptimiser/velvet_optimiser.py", line 67, in __main__ for line in open(contigs_path ): IOError: [Errno 2] No such file or directory: 'contigs.fa'
Can someone identify where the error is? The file missing (contigs.fa) is supposed to be built by the tool itself.
Thank you, Efthymios Ladoukakis ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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